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Perform code optimization and document cleanup (#1)
## Summary
- add repository-wide quality tooling and verification scaffolding, including CI workflows, pnpm workspace setup, ESLint/Prettier/markdown checks, and generated-output verification helpers
- reorganize skill sources and generation flow by introducing canonical `_source` variants, generator/manifests, reusable helper abstractions, and shared web-automation/browser utilities
- clean up and expand documentation so the root README flows into docs and skill docs, with clearer development, reviewer, installer, and workflow guidance

## Notable changes
- docs flow and consistency cleanup across `README.md`, `docs/README.md`, and related docs
- new scripts for `check`, docs verification, generated-file verification, shell portability, and safe directory replacement
- refactors in Atlassian and web-automation skill runtimes to reduce duplication and centralize reusable code
- changelog, development documentation, and CI surface updates

## Test Plan
- [ ] `pnpm run check`
- [ ] review generated/manifests and skill sync outputs
- [ ] smoke-check docs flow from `README.md` to `docs/README.md` to skill docs

## Notes
- this branch currently includes tracked `skills/web-automation/shared/node_modules` content that should be reviewed carefully as potentially noisy/accidental committed artifacts

Co-authored-by: Stefano Fiorini <stefano.fiorini@firsthorizon.com>
Reviewed-on: #1
2026-05-04 04:41:34 +00:00

18 KiB

Development Guide — ai-coding-skills

This document covers prerequisites, how to run checks locally, the quality tooling, the workspace policy, and the pnpm run check contract.

Prerequisites

Tool Minimum version Install
Node.js 20 fnm install 22 or nvm install 22
pnpm 10 npm install -g pnpm
rg (ripgrep) any brew install ripgrep / apt-get install ripgrep
shellcheck any brew install shellcheck / apt-get install shellcheck
stat (BSD or GNU) any pre-installed on macOS; GNU variant on Linux
Python 3 3.8+ pre-installed on most systems

shellcheck is required. The pnpm run lint script will exit 2 with a clear error message if shellcheck is not on PATH. Every contributor must install it before running any quality checks.

Quick start

# Install dependencies (workspace-aware, no nested package.json modifications)
pnpm install

# Run the full quality suite
pnpm run check

Individual checks

Command What it does
pnpm run sync:pi Mirror pi skill variants into pi-package/skills/
pnpm run verify:pi Assert pi resource and workflow invariants
pnpm run verify:reviewers Assert reviewer-runtime skill invariants
pnpm run test:installer Run root-level Node.js unit tests (22 tests)
pnpm run lint ESLint on root scripts + shellcheck on all .sh files
pnpm run lint:fix Auto-fix ESLint + Prettier (do not run on pre-existing code until M2)
pnpm run typecheck TypeScript tsc --noEmit in workspace packages
pnpm run test Run all tests (root + workspace packages)
pnpm run verify:docs markdownlint + offline link-check + docs-flow verifier
pnpm run verify:docs:online Same as verify:docs but with full external link checking
pnpm run verify:generated Assert generated output freshness (stub; fleshed out in M3)
pnpm run verify:ci Assert CI workflow files carry no pnpm version pins (see pnpm version pinning)
pnpm run check Aggregate: run every gate above and report a summary

Quality tooling (added in M1)

ESLint

Root-level flat config in eslint.config.mjs. Covers scripts/**/*.mjs and scripts/**/*.js. Uses @eslint/js recommended rules and Node.js globals. Nested workspace packages are responsible for their own ESLint configuration.

Prettier

Config in .prettierrc.json (print-width 100, LF line endings). Ignore file at .prettierignore excludes generated agent-variant directories and pnpm-lock.yaml.

markdownlint

Config in .markdownlint.jsonc (rules) and .markdownlint-cli2.jsonc (file globs and ignores). Key overrides vs defaults:

  • MD013 line-length relaxed to 120 chars (code blocks and tables excluded).
  • MD033 (inline HTML) disabled.
  • MD034 (bare URLs) disabled.
  • MD041 (first-line heading) disabled.
  • MD060 (table column style) disabled.

Run pnpm run verify:docs to lint all README.md, docs/*.md, and skills/**/SKILL.md files (node_modules excluded automatically).

Two configs:

  • markdown-link-check.jsonoffline mode (default): ignores all http:// and https:// links. Safe for local dev and CI.
  • markdown-link-check.online.jsononline mode: checks external links with a 10 s timeout, 2 retries, and retry-on-429. Use --online flag on scripts/lib/run-link-check.mjs.

pnpm run verify:docs uses the offline config by default.

shellcheck

Wrapper script at scripts/lib/run-shellcheck.mjs. Discovers every *.sh file under scripts/ and skills/ (excluding node_modules and generated agent-variant directories) and runs shellcheck on each.

Installation:

The wrapper exits with code 2 (not 1) when shellcheck is missing, so CI can distinguish "shellcheck absent" from "shellcheck found violations".

Cross-platform shell support (M2)

All shell scripts under scripts/ and skills/reviewer-runtime/ that are exercised by verify:pi, verify:reviewers, sync:pi, and test:installer must work on both macOS (BSD userland) and Ubuntu/Debian (GNU userland) without modification.

BSD vs GNU differences encountered

Feature macOS (BSD) Linux (GNU) Portable form
stat permissions stat -f '%Lp' <path> stat -c '%a' <path> portable_stat_perms helper
herestrings (<<<) supported (bash) supported (bash) OK (scripts use #!/usr/bin/env bash)
find -E (extended regex) macOS-only not available use grep or POSIX -name
sed -i '' macOS form use sed -i on Linux detect or avoid in-place sed
date -j (date arithmetic) macOS-only use date -d on Linux Node helper or date +%s
readlink -f not on macOS by default GNU standard realpath or cd && pwd

scripts/lib/portable.sh

A shared helper that abstracts the two known BSD/GNU divergences hit in this repo:

# Source from any script that needs portable stat
# shellcheck source=lib/portable.sh
source "$(dirname "${BASH_SOURCE[0]}")/lib/portable.sh"

# Returns octal permission string: e.g. "755"
portable_stat_perms "$path"

The shellcheck wrapper passes -x --source-path=SCRIPTDIR so source directives resolve relative to the script file, not the working directory.

How to run the Ubuntu smoke test locally

# Requires Docker
docker run --rm \
  -v "$PWD:/w" \
  -w /w \
  node:20-bookworm \
  bash -lc 'apt-get update -q && apt-get install -y -q shellcheck ripgrep python3 \
            && corepack enable \
            && pnpm install --frozen-lockfile \
            && pnpm run check'

This runs the full pnpm run check suite (lint, typecheck, test, verify:pi, verify:reviewers, verify:docs, verify:generated) inside a clean Debian Bookworm container with Node 20.

check contract (final — M5)

pnpm run check is fully green on a clean checkout with the documented prerequisites installed.

PASS  lint
PASS  typecheck
PASS  test
PASS  verify:pi
PASS  verify:reviewers
PASS  verify:docs
PASS  verify:generated
PASS  verify:ci

This is the only acceptable state for merge. Any failure on a check not in docs/CLEANUP-BASELINE.md is a regression and must be fixed before merge.

History: In M1 the contract was transitional and allowed pre-existing failures recorded in the baseline. M2 fixed verify:docs. M3 fixed lint and promoted verify:generated from stub to real implementation. M4 added abstractions without regressions. M5 added CI and finalized docs. The baseline is now closed out — see docs/CLEANUP-BASELINE.md.

pnpm workspace policy (updated in M3)

The pnpm-workspace.yaml at the repo root uses a positive-include policy introduced in M3. There are no negative-glob exclusions.

Canonical source packages (never generated):

  • skills/atlassian/shared/scripts — shared Atlassian TypeScript runtime
  • skills/web-automation/shared — shared web-automation runtime template

Generated agent-variant packages (uniquely named, positively included):

  • skills/atlassian/{claude-code,codex,cursor,opencode,pi}/scripts → names @ai-coding-skills/atlassian-{claude-code,codex,cursor,opencode,pi}
  • skills/web-automation/{claude-code,codex,cursor,opencode,pi}/scripts → names @ai-coding-skills/web-automation-{claude-code,codex,cursor,opencode,pi}
  • pi-package/skills/atlassian/scripts → name @ai-coding-skills/atlassian-pi-mirror
  • pi-package/skills/web-automation/scripts → name @ai-coding-skills/web-automation-pi-mirror

Why unique names matter:

Each package in a pnpm workspace must have a distinct name field. In M1 all generated agent-variant packages shared the same non-unique name as their canonical source package. In M3 every package receives a scoped unique name of the form @ai-coding-skills/<skill>-<agent>, enabling pnpm to include them alongside canonical source packages without conflicts. The pi-package mirrors use the -mirror suffix to distinguish them from the pi agent variants.

All generated packages are "private": true and are never published to any registry.

After pnpm install, git status should show zero modifications to any package.json file under any generated directory. If it does not, the workspace config or generator is broken.

How to interpret the baseline report

See docs/CLEANUP-BASELINE.md for the historical as-is capture from M1. That baseline is now closed — all pre-existing failures have been resolved. When a CI run fails on any check it is a regression and must be fixed before merge.

How variants are generated (M3)

Every agent-variant directory under skills/<skill>/<agent>/ and every pi-package/skills/<skill>/ mirror is generator-owned. Do not edit files inside these directories directly — edit the canonical source instead and run pnpm run sync:pi to regenerate.

Canonical sources (non-generated)

These directories are never generated and are never inside a generated root. They are the single source of truth for all content.

Skill Canonical source
atlassian SKILL.md: skills/atlassian/_source/<agent>/SKILL.md; scripts: skills/atlassian/shared/scripts/
web-automation SKILL.md: skills/web-automation/_source/<agent>/SKILL.md; scripts: skills/web-automation/shared/
create-plan skills/create-plan/_source/<agent>/ (SKILL.md + templates)
do-task skills/do-task/_source/<agent>/ (SKILL.md + templates)
implement-plan skills/implement-plan/_source/<agent>/SKILL.md
reviewer-runtime (base) skills/reviewer-runtime/run-review.sh, notify-telegram.sh

The _source/ directories and shared/ directories sit under the skill root outside every generated root. Stale-file detection (verify:generated) never traverses them.

Generated roots (authoritative list)

All paths are relative to the repo root.

skills/atlassian/{claude-code,codex,cursor,opencode,pi}/
skills/web-automation/{claude-code,codex,cursor,opencode,pi}/
skills/create-plan/{claude-code,codex,cursor,opencode,pi}/
skills/do-task/{claude-code,codex,cursor,opencode,pi}/
skills/implement-plan/{claude-code,codex,cursor,opencode,pi}/
skills/reviewer-runtime/pi/
pi-package/skills/{atlassian,create-plan,do-task,implement-plan,web-automation}/

Contributor workflow

  1. Edit the canonical source in the appropriate _source/<agent>/, shared/, or base skills/reviewer-runtime/ directory.

  2. Run the generator:

    pnpm run sync:pi        # regenerates all 31 generated roots
    
  3. Verify no drift:

    pnpm run verify:generated   # must exit 0
    
  4. Stage both the canonical source AND the generated output in the same commit. Never commit a canonical change without regenerating.

File-type-aware header policy

Every generated file (except JSON and pnpm-lock.yaml) receives a header identifying it as generated and pointing to the canonical source. Headers are inserted so they do not break parsers or tools:

File type Header form Placement
Markdown (with YAML front matter) <!-- ⚠️ GENERATED FILE ... --> After closing ---
Markdown (no front matter) <!-- ⚠️ GENERATED FILE ... --> Top of file
Shell script # ⚠️ GENERATED FILE ... After #! shebang
TypeScript / JavaScript // ⚠️ GENERATED FILE ... After #! shebang if present, else top
YAML (non-lockfile) # ⚠️ GENERATED FILE ... Top of file
JSON (no header — recorded in .generated-manifest.json)
pnpm-lock.yaml (no header — managed by pnpm)
JSONC // ⚠️ GENERATED FILE ... Top of file

.generated-manifest.json contract

Each generated root contains a .generated-manifest.json that:

  • Has a $schema marker and a generator field for identification.
  • Lists every other generator-owned path in that root (relative path, file mode, SHA-256 hash, kind).
  • Does NOT list itself (non-self-referential).
  • Is scoped to exactly one generated root — there is no manifest at skills/<skill>/.
  • Is verified structurally (not byte-for-byte) by verify:generated.

Package metadata (M3 change)

Each generated agent-variant package.json carries:

  • A unique private name in the form @ai-coding-skills/<skill>-<agent> (e.g. @ai-coding-skills/atlassian-claude-code).
  • "private": true to prevent accidental npm publication.

The pi-package mirrors (pi-package/skills/atlassian/scripts and pi-package/skills/web-automation/scripts) use the -mirror agent suffix (@ai-coding-skills/atlassian-pi-mirror, @ai-coding-skills/web-automation-pi-mirror) to distinguish them from the pi agent variants in the workspace.

This replaces the previous non-unique name fields (atlassian-skill-scripts, web-automation-scripts). These packages are private and are never published. See CHANGELOG.md for the full rename list.

Adding a new agent variant

To add support for a brand-new agent (e.g. mynewagent) across all skills:

  1. Create canonical source files for every skill:

    mkdir -p skills/<skill>/_source/mynewagent
    # Add SKILL.md (copy and adapt from an existing agent variant)
    
  2. Update the generator (scripts/generate-skills.mjs):

    • Add "mynewagent" to the AGENTS array (or the per-skill agent list).
    • Ensure any agent-specific substitution logic is handled.
  3. Regenerate all variants:

    pnpm run sync:pi
    pnpm run verify:generated     # must exit 0
    
  4. Update the workspace (pnpm-workspace.yaml):

    • Add entries for every skills/<skill>/mynewagent/scripts package that has a package.json (e.g. atlassian and web-automation).
  5. Update documentation:

    • Add a row to the skills table in README.md.
    • Add a row to the reviewer matrix in docs/REVIEWERS.md if the agent exposes a reviewer CLI.
    • Add an install guide at docs/MYNEWAGENT.md and link it from docs/README.md.
    • Add the doc file to the files list in root package.json.
  6. Verify the full suite:

    pnpm install
    pnpm run check
    

Adding a new skill

To add an entirely new skill (e.g. my-skill):

  1. Create the canonical source tree:

    mkdir -p skills/my-skill/_source/{claude-code,codex,cursor,opencode,pi}
    # Add SKILL.md to each _source/<agent>/ directory
    
  2. Update the generator (scripts/generate-skills.mjs):

    • Add "my-skill" to the SKILLS array.
    • Provide a getSkillMeta(skill) entry with agents list, source resolver, and any extra files to copy (templates, scripts, etc.).
  3. Regenerate:

    pnpm run sync:pi
    pnpm run verify:generated
    
  4. Add the pi-package entry if the skill should be distributed via the Pi package:

    • Update package.jsonpi.skills with the new path.
    • Update the files array to include the new skill directory.
  5. Write documentation in docs/MY-SKILL.md and link from docs/README.md and the skills table in README.md.

  6. Run the full suite: pnpm run check.

CI

Two GitHub Actions workflows live in .github/workflows/:

File Trigger Purpose
check.yml push, pull_request (all branches) Full pnpm run check on ubuntu-latest and macos-latest. Offline link-checking (no network dependency).
check-online.yml weekly schedule (Mon 09:00 UTC) + workflow_dispatch pnpm run verify:docs:online with full external link checking.

What the check workflow does

  1. Checks out the repository.
  2. Installs shellcheck via apt-get (Ubuntu) or brew (macOS).
  3. Installs ripgrep via apt-get (Ubuntu only; pre-installed on macOS runners).
  4. Installs Node.js 22 via actions/setup-node.
  5. Installs pnpm via pnpm/action-setup@v4no version: key is set; the action reads the version from package.json#packageManager (currently pnpm@10.18.1+sha512…), which is the single source of truth.
  6. Runs pnpm install --frozen-lockfile.
  7. Runs pnpm run check (the same command contributors run locally).

The matrix runs both ubuntu-latest and macos-latest to guard against platform-specific regressions. Because M2 made all shell scripts portable across BSD and GNU coreutils, both runners should stay green.

pnpm version pinning

The pnpm version is pinned exclusively in package.json#packageManager:

"packageManager": "pnpm@10.18.1+sha512.77a884a..."

This field carries an exact version and an integrity hash, giving stronger reproducibility than a floating major like version: "10". The pnpm/action-setup@v4 step in check.yml reads this field automatically; do not add a with.version key to that step.

pnpm run verify:ci (backed by scripts/lib/assert-no-pnpm-version-pin.mjs) greps every .github/workflows/*.yml for pnpm/action-setup blocks that carry a version: key and fails if any are found. This prevents reintroduction of the conflict that caused pnpm/action-setup@v4 to error.

Adding new prerequisites to CI

If a new tool is required (e.g. a new binary called by a verify script), add the install step to both OS branches in check.yml. Document the new prerequisite in the Prerequisites table at the top of this file.